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62 publications of 62 of all types

  • Stephen John Eglen, Michael Weeks, Mark Jessop, Jennifer Simonotto, Tom Jackson, Evelyne Sernagor, "A data repository and analysis framework for spontaneous neural activity recordings in developing retina", pp. 1-12, Giga Science, published by BioMed Central on 2014 . External link View/Edit
  • Maccione A, Hennig MH, Gandolfo M, Muthmann O, van Coppenhagen J, Eglen SJ, Berdondini L, Sernagor E, "Following the ontogeny of retinal waves: pan-retinal recordings of population dynamics in the neonatal mouse", pp. 1545-1563, J Physiol, Vol. 592, No. 8, published by Journal of Physiology on 23- 12- 2013 . External link View/Edit
  • Michael Weeks, Mark Jessop, Martyn Fletcher, Victoria Hodge, Tom Jackson, Jim Austin, "The CARMEN software as a service infrastructure", Series A, Mathematical, physical, and engineering sciences, 371, published by Royal Society journal on Philosophical transactions on 2013 . External link View/Edit
  • Xuejuan Zhang, Keith M. Kendrick, Haifu Zhou1, Yang Zhan, Jianfeng Feng, "A Computational Study on Altered Theta-Gamma Coupling during Learning and Phase Coding", pp. 1-14, 7, published by PLoS One on 2012 . External link View/Edit
  • F.P. Chabrola, S.J. Eglenb, E. Sernagor, "GABAergic control of retinal ganglion cell dendritic development", pp. 30-43, 227, published by Elseiver on 2012 . External link View/Edit
  • Matthias R. Brust, Damla Turgut, Carlos H.C. Ribeiro, Marcus Kaiser, "Is the Clustering Coefficient a Measure for Fault Tolerance in Wireless Sensor Networks?", pp. 183-187, 2012 . PDF download View/Edit
  • Jose Marcelino, Marcus Kaiser, "Critical paths in a metapopulation model of H1N1: Efficiently delaying influenza spreading through flight cancellation", 4, published by PLoS Currents on 2012 . External link View/Edit
  • Marcus Kaiser, "A tutorial in connectome analysis: Topological and spatial features of brain networks ", NeuroImage , In Press, published by Elsevier on 5- 2011 . External link View/Edit
  • Christoph Echtermeyer1, Luciano da Fontoura Costa, Francisco A. Rodrigues, Marcus Kaiser, "Automatic Network Fingerprinting through Single-Node Motifs", 6, published by PLoS ONE on 31- 1- 2011 . PDF download External link View/Edit
  • Sreedevi Varier1, Marcus Kaiser, "Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network", PLoS Computational Biology, 7, published by PLoS One on 6- 1- 2011 . PDF download External link View/Edit
  • Matthias H. Hennig, John Grady, James van Coppenhagen, Evelyne Sernagor, "Age-dependent Homeostatic Plasticity of GABAergic Signaling in Developing Retinal Networks", pp. 12159-12164, The Journal of Neuroscience, 31, published by Society for Neuroscience on 2011 . External link View/Edit
  • Sreedevi Varier, Marcus Kaiser, Rob Forsyth, "Establishing, versus Maintaining, Brain Function: A Neuro-computational Model of Cortical Reorganization after Injury to the Immature Brain", pp. 1030-1038, Journal of the International Neuropsychological Society, 17, published by Cambridge University Press on 2011 . PDF download View/Edit
  • Marcus Kaiser, Sreedevi Varier, "Evolution and development of Brain Networks: From Caenorhabditis elegans to Homo sapiens", pp. 143-147, Network: Computation in Neural Systems, 22, published by Informa Healthcare on 2011 . External link View/Edit
  • Jim Austin, Tom Jackson, Martyn Fletcher, Mark Jessop, Bojian Liang, Mike Weeks, Leslie Smith, Colin Ingram, Paul Watson, "CARMEN: Code analysis, Repository and Modeling for e-Neuroscience", pp. 768-777, 4, published by Elsevier on 2011 . External link View/Edit
  • Matthias H Hennig, Alessandro Maccione, Mauro Gandolfo, Matthew Down, Stephen J Eglen, Luca Berdondini, Evelyne Sernagor4, "Analysis of simultaneous multielectrode recordings with 4,096 channels: changing dynamics of spontaneous activity in the developing retina", pp. 296-297, BMC Neuroscience, 12, 2011 . PDF download View/Edit
  • Christoph Echtermeyer, Luciano da Fontoura Costa, Francisco A. Rodrigues, Marcus Kaiser, "Automatic Network Fingerprinting through Single-Node Motifs", pp. 1-9, Volume 6, Issue 1, published by PLoS One on 2011 . External link View/Edit
  • Derek J. Hoare, James Humble, Ding Jin, Niall Gilding, Rasmus Petersen, Matthew CobbCatherine McCrohan, "Modeling Peripheral Olfactory Coding in Drosophila Larvae", pp. 1-11, Voulme 6, Issue 8, published by PLoS One on 2011 . External link View/Edit
  • Paul Watson, Hugo Hiden, Simon Woodman, "e-Science Central for CARMEN: science as a service", pp. 2369-2380, Concurrency and Computation: Practice and Experience, volume 22, issue 17, published by WILEY on 10- 12- 2010 . PDF download External link View/Edit
  • Mark Jessop, Mike Weeks, Jim Austin, "CARMEN: a practical approach to metadata management", pp. 4147-4159, Phil. Trans. R. Soc., 368, published by The Royal Society on 1- 9- 2010 . PDF download External link View/Edit
  • S. Shahid, J. Walker, L.S. Smith, "A new spike detection algorithm for extracellular neural recordings", pp. 853-866, IEEE Transactions on Biomedical Engineering, 57(4), 4- 2010 . External link View/Edit
  • Roopun AK, Simonotto JD, Pierce ML, Jenkins A, Schofield IS, Whittaker RG, Kaiser M, Whittington MA, Traub RD, Cunningham MO, " A nonsynaptic mechanism underlying interictal discharges in human epileptic neocortex.", pp. 338-343, 107, published by Proc. Natl. Acad. Sci. USA on 2010 . External link View/Edit
  • RAA Ince, A Mazzoni, R Petersen, S Panzeri, "Open source tools for the information theoretic analysis of neural data", pp. 62-70, Frontiers in Neuroscience , 4 (1), 2010 . View/Edit
  • RAA Ince, R Senatore, E Arabzadeh, F Montani, ME Diamond, S Panzeri, "Information theoretic methods for studying population codes ", Neural Networks, 2010 . View/Edit
  • Kaiser M, Hilgetag CC, "Optimal hierarchical modular topologies for producing limited sustained activation of neural networks", Frontiers in Neuroinformatics , 4:8, 2010 . External link View/Edit
  • Marcelino J, Kaiser M, "Reducing influenza spreading over the airline network", PLoS Currents: Influenza RRN1005 , 2010 . External link View/Edit
  • Kaiser M, Simonotto J, "Limited Spreading: How Hierarchical Networks prevent the Transition to the Epileptic State.", Modeling Phase Transitions in the Brain, published by Springer Series in Computational Neuroscience on 2010 . View/Edit
  • Pedro Ribeiro, Jennifer Simonotto, Marcus Kaiser, Fernardo Silva, "Parallel calculation of multi-electrode array correlation networks", pp. 357-364, Journal of Neuroscience Methods, Volume 184, Issue 2, published by Elseiver Ltd. on 15- 11- 2009 . PDF download View/Edit
  • Martinez J., Pedreira C., Ison MJ, Quian Quiroga R, "Realistic simulation of extracellular recordings", pp. 285-293, Journal of Neuroscience Methods, 184, published by Elseiver Ltd. on 18- 8- 2009 . PDF download View/Edit
  • Christoph Echtermeyer, Tom V. Smulders, V. Anne Smith, "Causal pattern recovery from neural spike train data using the Snap Shot Score ", Journal of Computational Neuroscience, published by Springer Netherlands on 30- 7- 2009 . PDF download External link View/Edit
  • S. R. Schultz, K. Kitamura, J. Krupic, A. Post-Uiterweer, M. Häusser, "Spatial pattern coding of sensory information by climbing-fiber evoked calcium signals in networks of neighboring cerebellar Purkinje cells", pp. 8005-8015, J Neurosci, 29, 24- 6- 2009 . External link View/Edit
  • Robin A A. Ince, Rasmus S. Petersen, Daniel C. Swan, Stefano Panzeri, "Python for information theoretic analysis of neural data", Frontiers in Neuroinformatics, v3, issue 4, 11- 2- 2009 . External link View/Edit
  • Hennig MH, Adams C, Willshaw David, Sernagor E, "Early-stage waves in the retinal network emerge close to a critical state transition between local and global functional connectivity.", pp. 1077-1086, Journal of Neuroscience, 29, 1- 2009 . External link View/Edit
  • RS Petersen, S Panzeri, M Maravall, "Neural coding and contextual influences in the whisker system", pp. 427-446, Biological Cybernetics, v100, 2009 . External link View/Edit
  • F Montani*, RAA Ince*, R Senatore, E Arabzadeh, ME Diamond, S Panzeri, "The impact of high-order interactions on the rate of synchronous discharge and information transmission in somatosensory cortex", pp. 3297-3310, Philosophical Transactions of the Royal Society A , Volume 367, Issue 1901, 2009 . External link View/Edit
  • Ribeiro P, Silva F, Kaiser M., "Strategies for Network Motifs Discovery", pp. 80-87, 2009 Fifth IEEE International Conference on e-Science, 2009 . External link View/Edit
  • RAA Ince, F Montani, E Arabzadeh, ME Diamond, S Panzeri, "On the presence of high-order interactions in somatosensory cortex and their effect on information transmission ", Journal of Physics: Conference Series, Volume 197, Number 1, 2009 . External link View/Edit
  • Kaiser M, Hilgetag CC, "Random outgrowth and spatial competition generate realistic connection length distributions and filling fractions", pp. 3001-3010, Cerebral Cortex , 19, 2009 . External link View/Edit
  • Costa LdF, Rodrigues FA, Hilgetag CC, Kaiser M, "Beyond the average: detecting global singular nodes from local features in complex networks", Europhysics Letters , 87:18008, 2009 . External link View/Edit
  • Kaiser M, Simonotto J, "Structural and Functional Dynamics in Cortical and Neuronal Networks. In: Dehmer & Emmert-Streib, “Analysis of Complex Networks: From Biology to Linguistics”. ", Dehmer & Emmert-Streib, “Analysis of Complex Networks: From Biology to Linguistics", published by Wiley-VCH on 2009 . View/Edit
  • Martyn Fletcher, Bojian Liang, Leslie Smith, Alastair Knowles, Tom Jackson, Mark Jessop, Jim Austin, "Neural Network Based Pattern Matching and Spike Detection Tools and Services in the CARMEN Neuroinformatics Project", pp. 1076-1084, Neural Networks, Special Issue on Neuroinformatics, Volume 21, Issue 8, published by Elsevier Ltd. on 10- 2008 . PDF download External link View/Edit
  • Shahjahan Shahid, Leslie Smith, "Assessing New Techniques for Spike Detection on MEA Data ", Reutlingen, MEA 2008, Submitted, ISBN 3-938345-05-5, 8- 7- 2008 . PDF download View/Edit
  • Paul Watson, Phillip Lord, Frank Gibson, Panayiotis Periorellis, Georgios Pitsilis, "Cloud Computing for e-Science with CARMEN", Porto, May 2008, IBERGRID 2008, 1- 5- 2008 . PDF download View/Edit
  • Mélanie Courtot, William Bug, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan Brinkman, Alan Ruttenberg, "The OWL of Biomedical Investi-gations", OWLED 2008, 2008 . External link View/Edit
  • MA Montemurro, MJ Rasch, Y Murayama, NK Logothetis, S Panzeri, "Phase-of-firing coding of natural visual stimuli in primary visual cortex", pp. 375-380, Current Biology, v18, issue 5, 2008 . External link View/Edit
  • A Belitski, A Gretton, C. Magri, Y. Marayama, M. A. Montemurro, N. K. Logothetis, S. Panzeri, "Low-Frequency Local Field Potentials and Spikes in Primary Visual Cortex Convey Independent Visual Information", pp. 5696-5709, Journal of Neuroscience, v28: 22, 2008 . External link View/Edit
  • S Panzeri, C Magri, NK Logothetis, "On the use of information theory for the analysis of the relationship between neural and imaging signals", pp. 1015-1025, Magnetic Resonance Imaging, v26, issue 7, 2008 . External link View/Edit
  • RS Petersen, M Brambilla, MR Bale, A Alenda, S Panzeri, MA Montemurro, M Maravall, "Diverse and Temporally Precise Kinetic Feature Selectivity in the VPm Thalamic Nucleus", pp. 890-903, Neuron, v60, Issue 5, 2008 . External link View/Edit
  • Hilgetag CC,, Kaiser M, "Organization and Function of Complex Cortical Networks", pp. 107-133, Lectures in Supercomputational Neuroscience: Dynamics in Complex Brain Networks, ISBN 978-3-540-73158-0, published by Springer on 2008 . View/Edit
  • A Mazzoni, S Panzeri, NK Logothetis, N Brunel, "Encoding of naturalistic stimuli by local field potential spectra in networks of excitatory and inhibitory neurons", PLoS Computational Biology, v4, issue 12, 2008 . External link View/Edit
  • Roopun A, Kramer M, Carracedo L, Kaiser M, Davies C, Traub R, Kopell N, Whittington M, "Temporal interactions between cortical rhythms", pp. 145-154, Frontiers in Neuroscience , 2, 2, 2008 . External link View/Edit
  • Kaiser M, "Mean clustering coefficients - the role of isolated nodes and leafs on clustering measures for small-world networks", New Journal of Physics, 10:083042, 2008 . External link View/Edit
  • Roopun A, Kramer M, Carracedo L, Kaiser M, Davies C, Traub R, Kopell N, Whittington M, "Period concatenation underlies interactions between gamma and beta rhythms in neocortex. ", Frontiers in Cellular Neuroscience, 2:1, 2008 . External link View/Edit
  • Kaiser M, "Multiple-scale hierarchical connectivity of cortical networks limits the spread of activity", pp. 132-140, Soltesz & Staley, “Computational Neuroscience in Epilepsy”, ISBN 978-0-12-373649-9, published by Academic Press on 2008 . View/Edit
  • Leslie Smith, Shahjahan Shahid, Anthony Vernier, N. Mtetwa, "Finding events in noisy signals", pp. 31-36, signalsThe IET Irish Signals and Systems Conference, ISBN 978 0 86341 847 1, 13- 9- 2007 . PDF download View/Edit
  • Paul Watson, Tom Jackson, Georgios Pitsilis, Frank Gibson, Jim Austin, Martyn Fletcher, Bojian Liang, Phillip Lord, "The CARMEN Neuroscience Server", Nottingham, UK e-Science All Hands Meeting 2007, 1- 9- 2007 . PDF download View/Edit
  • L.S. Smith, J. Austin, S. Baker, R. Borisyuk, S. Eglen, J. Feng, K. Gurney, T. Jackson, M. Kaiser, P. Overton, S. Panzeri, R. Quian Quiroga, S.R. Schultz, E. Sernagor, V.A. Smith, T.V. Smulders, L. Stuart, M. Whittington, C. Ingram, "The CARMEN e-Science pilot project: Neuroinformatics work packages", Nottingham, UK, pp. 591-598, Proceedings of the UK e-Science All Hands Meeting, 9- 2007 . External link View/Edit
  • Christoph Echtermeyer, V Anne Smith, "Bayesian network search: relationship of search space structure to starting networks", Vienna, Austria, ISMB & ECCB 2007, 21- 7- 2007 . View/Edit
  • Kaiser M, "Brain architecture: a design for natural computation", pp. 3033-3045, Philosophical Transactions of the Royal Society A,, 365 , 2007 . External link View/Edit
  • Kaiser M, Görner M, Hilgetag CC, "Criticality of spreading dynamics in hierarchical cluster networks without inhibition", New Journal of Physics , 9:110 , 2007 . External link View/Edit
  • Costa LdF, Kaiser M, Hilgetag CC, "Predicting the connectivity of primate cortical networks from topological and spatial node properties", BMC Systems Biology , 1:16 , 2007 . External link View/Edit
  • S Panzeri, R Senatore, MA Montemurro, RS Petersen, "Correcting for the Sampling Bias Problem in Spike Train Information Measures", pp. 1064-1072, Journal of Neurophysiology, v98, issue 3, 2007 . External link View/Edit
  • Nisbach F, Kaiser M, " Developmental time windows for spatial growth generate multiple-cluster small-world networks", pp. 185-191, European Physical Journal B, 58, 2007 . External link View/Edit
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